YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76874593, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGYFSVLLV LLTLGSGLIW LIDHLMFAPK RNAHLAMAEA SAGGKLDEET AALIAPEPML  60
   61 TETAKSIFPM IAAITIFRSF MFEPFQIPSG SMMPTLLVGD FILVQKYSYG IKDPVWRSQL 120
  121 VDVGEPERGD IIVFKYPLDE KVDFIKRTIG LPGDKIVYRD KRLYIQPNCK AGETQQGELL 180
  181 CNEFNKIDFK LINDDEFKQG SMALARLNEN LTTLNHDILI NPQAPERKGR YYQQPGTPTD 240
  241 EWVVPADHYF MMGDNRDNSQ DSRFWGFVPK ENLVGKAVFI WMSFEFDNGP DDILPGWVPT 300
  301 GVRFERLGNI Q

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.43
Transmembrane Helix	7	27	0.62
Cytoplasmic	28	63	0.49
Transmembrane Helix	64	82	0.42
Non-Cytoplasmic	83	311	0.73