YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76874257, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSQLWFYLT TIGLVSLCVG SFLNVVIYRL PLMMQHEWQG ECRLLLESEL KGNKADESES  60
   61 LNSTFNLVKP NSTCPKCKTA IKAWQNIPVV SWLFLKGKCA SCSNPISARY PIVEAITALL 120
  121 SLVVAYKLGA TEQALLYIAI TWALVALTFI DIDHMLLPDQ ITLPLVWLAL IAAVLGYTVT 180
  181 PTDAIIGAAC GYLSLWSVFW LFKLLTGKEG MGYGDFKLLA VFGALLGWQS LLTIILLSSV 240
  241 VGAIIGIALL TIQGKDKATP IPFGPYLAIA GWITMLWGEQ LQTSYFNLIG Y

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.75
Transmembrane Helix	7	28	0.94
Cytoplasmic	29	133	0.74
Transmembrane Helix	134	152	0.90
Non-Cytoplasmic	153	160	0.41
Transmembrane Helix	161	180	0.86
Cytoplasmic	181	183	0.48
Transmembrane Helix	184	206	0.77
Non-Cytoplasmic	207	225	0.66
Transmembrane Helix	226	252	0.84
Cytoplasmic	253	258	0.73
Transmembrane Helix	259	278	0.85
Non-Cytoplasmic	279	291	0.69