YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77734543
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKEPRLQ QLGLLEEEQL RGLGFRQTRG YKSLAGCLGH GPLVLQLLSF TLLAGLLVQV  60
   61 SKVPSSISQE ESRQDVIYQN LTQLKAAVGE LSEKSKLQEI YQELTQLKAA VGELPEKSKQ 120
  121 QEIYQELTRL KAAVGELPEK SKMQEIYQEL TRLKAAVGEL PEKSKMQEIY QELTRLKAAV 180
  181 GELPEKSKQQ EIYQELTQLK AAVGELPEKS KQQEIYQELT QLKAAVGELP EKSKQQEIYQ 240
  241 ELTQLKAAVG ELPEKSKQQE IYQELTRLKA AVGELPEKSK QQEIYQELTQ LKAAVERLCR 300
  301 RCPWEWTFFQ GNCYFMSNSQ RNWHDSITAC KEVGAQLVVI KSAEEQNFLQ LQSSRSNRFT 360
  361 WMGLSDLNEE GTWQWVDGSP LLPSFNQYWN RGEPNNVGEE DCAEFSGNGW NDDKCNLAKF 420
  421 WICKKSAASC SRDEEQFLSP APATPNPPPA

Type	Start	End	Confidence
Cytoplasmic	1	35	0.82
Transmembrane Helix	36	58	0.78
Non-Cytoplasmic	59	450	0.99