YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|79527307
Protein type:	Globular with Signal Peptide
Type Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMFSVTKGLI RNLALFQVRL PPLVAAVMAP SSVVRVYSTA TSPSPSEISV KKVGTHNGSF  60
   61 HCDEALGCFM IRLVDKFSGA DIVRSRDPKI LAELDAVLDV GGVYDPEHDR YDHHQKGFEE 120
  121 VFGHGFNTKL SSAGLVYKHF GKEIIAKELN VEQDHPDVLR LFLAVYKSFM EAIDAVDNGI 180
  181 NRYDTDQPPR YVNNTHLSPR VGRLNLDWID PDQSQEKENE AFQRAMALAG KEFLESVQFH 240
  241 ARSWLPARSI VMQCLEERFK TDPSGEIMIL DRFCPWKLHL FELEQEMKIE PLIKYVIYQD 300
  301 ERAKQWRVQA VAVAPDRFEN RKPLPEKWRG LRDEELSKAA EIPGCVFVHM SGFIGGNQSY 360
  361 DGALSMAQTA LTL

Type	Start	End	Confidence
Signal Peptide	1	26	0.62
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	373	0.97