YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|79320540
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMGTSTFVI RWVNLLTMLL AVAVIIFGVW MSTHNDGCRR SLTFPVIALG GFIFLISIIG  60
   61 FLGACKRSVA LLWIYLAVLL IVLIAILVFT VLAFIVTNNG SGHTNPGLRY KEYKLNDYSS 120
  121 WFLKQLNNTS NWIRLKSCLV KSEQCRKLSK KYKTIKQLKS AELTPIEAGC CRPPSECGYP 180
  181 AVNASYYDLS FHSISSNKDC KLYKNLRTIK CYNCDSCKAG VAQYMKTEWR LVAIFNVVLF 240
  241 VVLISSLLST RFDSEQSFGL LNVNGLLCWM LCEKKCC

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.55
Transmembrane Helix	8	31	0.88
Cytoplasmic	32	41	0.48
Transmembrane Helix	42	64	0.93
Non-Cytoplasmic	65	70	0.50
Transmembrane Helix	71	96	0.90
Cytoplasmic	97	228	0.56
Transmembrane Helix	229	250	0.81
Non-Cytoplasmic	251	277	0.59