YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|79327804
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.94
Transmembrane Helix	38	59	0.92
Non-Cytoplasmic	60	76	0.88
Transmembrane Helix	77	100	0.89
Cytoplasmic	101	107	0.86
Transmembrane Helix	108	127	0.92
Non-Cytoplasmic	128	132	0.78
Transmembrane Helix	133	154	0.91
Cytoplasmic	155	164	0.88
Transmembrane Helix	165	188	0.89
Non-Cytoplasmic	189	207	0.88
Transmembrane Helix	208	227	0.95
Cytoplasmic	228	269	0.96
Transmembrane Helix	270	293	0.87
Non-Cytoplasmic	294	316	0.87
Transmembrane Helix	317	336	0.92
Cytoplasmic	337	345	0.85
Transmembrane Helix	346	367	0.92
Non-Cytoplasmic	368	380	0.68
Transmembrane Helix	381	399	0.92
Cytoplasmic	400	411	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEYAECLL EKNFHEDCSG CKVDQMKRLR RGFPFWELFT VWIIVLCTAL PISSLFPFLY  60
   61 FMIDDFNIAK KEEDIGFYAG FVGCSFMLGR AFTSVAWGLV ADRYGRKPVI LIGTASVVVF 120
  121 NTLFGLSLNF WMAIITRFCL GSFNGLLGPI KAYAMEIFRD EYQGLALSAV STAWGIGLII 180
  181 GPAIGGFLAQ PAKQYPSLFS QDSIFGKFPF FLPCLAISVF AFLVTIVSSR IPETLHNHKF 240
  241 NDDESYDALK DLSDDPESNK VAERNGKSSL LNNWPLISSI IVYCVFSLHD MAYTEIFSLW 300
  301 ANSPRKYGGL GYSTADVGSV LAFSGFGLLI FQLSLYSYAE RLLGPIIVTR ISGSLAMVVL 360
  361 SCYPLIAKLS GLALTVTVTS ASVAKSVLGT SAITGLFILQ NKAVTRPKRS S