YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|79494795
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLHKTLFT QNPTTLDQLM MCHTGRDNSW KKLENIDEEG PSTVAREVRT ALPPETPTEM  60
   61 MEFLGRSWSI SAVELTRAFF NNSTADTNSF LLSTIVNTNK EDREDEEDST SMASSRDLLL 120
  121 PHVGNKTSPP ITPRTGREMK HLYKSMIRGR TMGRRLKDQK EKKKQETRTR NAEIHAAVSV 180
  181 AGVAAVVAAT AASNAIAAAE DAVESTTVAA AMASAAALIA SHCIEIAGEI GAGYNQIATA 240
  241 VSSATNARTN GDIMALTASA ATGIIYCFLA

Type	Start	End	Confidence
Cytoplasmic	1	173	0.82
Transmembrane Helix	174	197	0.80
Non-Cytoplasmic	198	206	0.73
Transmembrane Helix	207	228	0.71
Cytoplasmic	229	248	0.65
Transmembrane Helix	249	269	0.52
Non-Cytoplasmic	270	270	0.55