YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPA2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALQIHSPCS FSTRPYHLFF TTRNPRFAIK CQNSQIESDT TEDPSRSKNS SSSGVGFGSP  60
   61 ASSSSPAKKL SAATSGNKKG KGKREVNRRA PVEKPVFMSE EGAAKAEEQR QNENAFLLTW 120
  121 LGLGIVILIE GIILAASGFL PEELDKLFVK YVYPVFTPSV VLFVAGTTAY GVLKYIQNEK 180
  181 MKGQE

Type	Start	End	Confidence
Cytoplasmic	1	115	0.97
Transmembrane Helix	116	139	0.90
Non-Cytoplasmic	140	151	0.89
Transmembrane Helix	152	173	0.90
Cytoplasmic	174	185	0.87