YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSLAB_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEDLELGNQ NFPMVLVQIP MYNEREVFKL SIGAACRLIW PLDRLIVQVL DDSTDPTIME  60
   61 MVSTECGKWA TKGINIKCER RDNRNGYKAG ALKQGMRHSY VKTCTYIAIF DADFQPEPDY 120
  121 LERTVPFLIH NPELALVQAR WKFVNAKKCL MTRMQEMSLN YHFTAEQESG STRHAFFGFN 180
  181 GTAGVWRLAA MEEAGGWKDR TTVEDMDLAV RVGLHGWKFV FVNDVSVKSE LPSQFKAFRF 240
  241 QQHRWSCGPA NLFRKMTMEI IRNKRVTIWK KLYVIYSFFF VRKIIVHFFT FFFYCFILPT 300
  301 SVFFPEVNIP TWSTVYFPFM ITLFNAIATP RSFYLVIFWV LFENVMAMHR TKGTFIGLLE 360
  361 GGRVNEWVVT EKLGDALETK LLPQVRKPRN GFLERINSKE MMVGIYILCC ASYNLVFGKT 420
  421 VLYIYLYMQA LAFIIAGIGF IGT

Type	Start	End	Confidence
Cytoplasmic	1	278	0.92
Transmembrane Helix	279	303	0.79
Non-Cytoplasmic	304	318	0.83
Transmembrane Helix	319	342	0.88
Cytoplasmic	343	395	0.97
Transmembrane Helix	396	417	0.65
Non-Cytoplasmic	418	422	0.57
Transmembrane Helix	423	442	0.89
Cytoplasmic	443	443	0.70