YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|79324943
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.97
Transmembrane Helix	33	55	0.92
Non-Cytoplasmic	56	111	0.95
Transmembrane Helix	112	132	0.95
Cytoplasmic	133	152	0.92
Transmembrane Helix	153	173	0.94
Non-Cytoplasmic	174	181	0.69
Transmembrane Helix	182	204	0.81
Cytoplasmic	205	213	0.58
Transmembrane Helix	214	237	0.84
Non-Cytoplasmic	238	269	0.51
Transmembrane Helix	270	296	0.76
Cytoplasmic	297	334	0.47
Transmembrane Helix	335	355	0.91
Non-Cytoplasmic	356	374	0.65
Transmembrane Helix	375	393	0.81
Cytoplasmic	394	399	0.56
Transmembrane Helix	400	419	0.90
Non-Cytoplasmic	420	437	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGASSPASL RASRSRRLGK ETNRSDLFKK PAVPFAFALI LADAILVALI IAYVPYTKID  60
   61 WDAYMSQVSG FLGGERDYGN LKGDTGPLVY PAGFLYVYSA VQNLTGGEVY PAQILFGVLY 120
  121 IVNLGIVLII YVKTDVPWWA LSLLCLSKRI HSIFVLRLFN DCFAMTLLHA SMALFLYRKW 180
  181 HLGMLVFSGA VSVKMNVLLY APTLLLLLLK AMNIIGVVSA LAGAALVQIL VGLPFLITYP 240
  241 VSYIANAFDL GRVFIHFWSV NFKFVPERVF VSKEFAVCLL IAHLFLLVAF ANYKWCKHEG 300
  301 GIIGFMRSRH FFLTLPSSLS FSDVSASRII TKEHVVTAMF VGNFIGIVFA RSLHYQFYSW 360
  361 YFYSLPYLLW RTPFPTWLRL IMFLGIELCW NVYPSTPSSS GLLLCLHLII LVGLWLAPSV 420
  421 DPYQLKEHPK SQIHKKA