YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77683091, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVNQTEVY VYEQVVILTS CVLSFFGSLL IISTYVSWLD LRTTPRKLLV YLSVSDRLSA  60
   61 LSYFYGVCQI FKSDSWDCIA QGAVSTFANT SSFFWTVAIA IYLYVFIVKS SQRQADNLVL 120
  121 YFHLISWGVP FAITVAALSL HKIGYDASEV SVGWCWVNIQ AEDHVLWMLL TGKIWEFIAY 180
  181 VTLPVLYILI KIHIYRAHAA LSEYRPILTS NPVSNSLSSI ADRKLTLIPI IFIMLRVWST 240
  241 VRFLLLLTSS PAGHNPVLVT LHGIGNTFQG AANCIMFVLF TPSIRSRLIA LLLCRGQDRS 300
  301 WNSESASQNR TNDHTVSHRE DNSEE

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.60
Transmembrane Helix	15	39	0.86
Cytoplasmic	40	47	0.59
Transmembrane Helix	48	67	0.55
Non-Cytoplasmic	68	85	0.86
Transmembrane Helix	86	108	0.86
Cytoplasmic	109	118	0.90
Transmembrane Helix	119	140	0.93
Non-Cytoplasmic	141	173	0.91
Transmembrane Helix	174	195	0.87
Cytoplasmic	196	224	0.98
Transmembrane Helix	225	246	0.85
Non-Cytoplasmic	247	260	0.75
Transmembrane Helix	261	281	0.85
Cytoplasmic	282	325	0.92