YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE39241
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.76
Transmembrane Helix	6	26	0.89
Cytoplasmic	27	33	0.81
Transmembrane Helix	34	53	0.79
Non-Cytoplasmic	54	61	0.78
Transmembrane Helix	62	82	0.93
Cytoplasmic	83	89	0.89
Transmembrane Helix	90	109	0.95
Non-Cytoplasmic	110	126	0.91
Transmembrane Helix	127	147	0.94
Cytoplasmic	148	163	0.90
Transmembrane Helix	164	185	0.90
Non-Cytoplasmic	186	199	0.80
Transmembrane Helix	200	222	0.82
Cytoplasmic	223	230	0.86
Transmembrane Helix	231	252	0.88
Non-Cytoplasmic	253	259	0.83
Transmembrane Helix	260	280	0.93
Cytoplasmic	281	292	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLMTFSTFL FISTVGLVST SKFFTVKNQI PLKGYFKTVT MFFIVNVVNN QALNFHVPVP  60
   61 LHIIFRSGSL LATLILSVVM VGKSYSARKY ISVFAITIGI VICTLATSTQ GDSGLSMEEA 120
  121 SKHYKEWTIG IIMLTFALLA SAVLAIYQQQ MYEKYGKHPD EAMFITHLIS LPFFLIMGSD 180
  181 IVSAATKLSA SAPHSVFPWL PSLWVDLIAS CLLQYGCIKY VYQLNSRVDS LTVTLVVTLR 240
  241 KFLSLIVSIV YFKNPFTPQH WLGAILVFAG TLAFADIWGS QTANKQDEKK KQ