YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE39304
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.77
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHISGKQCP MVLIIRLLLQ LSSTVSAELS RSMTLTYSPQ SIHDLEEYGS TDVNVTLKFP  60
   61 KNEFETENIE HYALSVNSFH PETATADYNT EKLKTEQFRL NGQFYETETI ITINGNLLGK 120
  121 TAMKMRLVPA AEYYNETRSQ FEWKTEKLNS PKLAENEPLR GGGGDWLDVW VVRSKESRRL 180
  181 TVYFVISVVV LISMANVMMG CELDIDAVLA TLKKPVAPGI GLFAQFIIMP LLSYLIAYAI 240
  241 FMPRGLYSMA LGLFVTGCSP GGGASNFWTL LLDGNLNLSV TMTFISTICS LVMMPAWLYF 300
  301 LGHPFLQGFN STAVIKVKIL EKTAKIALEI GKSL

Type	Start	End	Confidence
Signal Peptide	1	27	0.76
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	179	0.79
Transmembrane Helix	180	201	0.91
Cytoplasmic	202	218	0.69
Transmembrane Helix	219	241	0.90
Non-Cytoplasmic	242	248	0.63
Transmembrane Helix	249	270	0.92
Cytoplasmic	271	279	0.61
Transmembrane Helix	280	301	0.93
Non-Cytoplasmic	302	334	0.75