YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78713607, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEDNLETVT SLPSDLSTRE NITIQLEELL VAGNYDEAKL LLEPSQPVDI ADAIGSLPLI  60
   61 LQALAFRLLK KNEAIEVYEY LDPIVQQTLL DRLRSGEVLE IVEKMSPDDR VQLFDELPAK 120
  121 VVRKFLSALS PGERKVTAEL LGYEPETAGR LMTTEFIDLK EMQTAAEALA LVRKRAPYTE 180
  181 TIYSLYVTDK ERHLTGILSL RDLVTADPSK PIGDVMTKDV VNISTNTNQE EVARAIQRYD 240
  241 FLALPVVDKE KRLVGIVTVD DLIDVIEQEA TRDIYAAGAV QPGDEDDYFQ SSLFTIARRR 300
  301 ILWLLILVLA NGLTTKVIAM NDQILKEIVL LAAFIPLLIG TGGNVGAQSS TVVIRGLSTQ 360
  361 KLKSLGAIKA VVKEAITGAL LGVLMMLVVF PFAWWQGEGP LIASAVGISL ISITTLAATT 420
  421 GAILPLLFDR MRLDPALMSS PFITTITDIA GVFIYLSTAK WLLSLSLI

Type	Start	End	Confidence
Cytoplasmic	1	300	0.95
Transmembrane Helix	301	320	0.95
Non-Cytoplasmic	321	327	0.89
Transmembrane Helix	328	354	0.83
Cytoplasmic	355	374	0.85
Transmembrane Helix	375	395	0.93
Non-Cytoplasmic	396	401	0.87
Transmembrane Helix	402	428	0.86
Cytoplasmic	429	436	0.90
Transmembrane Helix	437	459	0.83
Non-Cytoplasmic	460	468	0.79