YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78191452
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATLILKPS LSSAFLGQKL SSRGNSKRSE PSRLFSKGTK CATDTAYGGN IPKFSRLNVW  60
   61 DPYKRLGISR DASEEEVWSS RNFLLNQYAN HERSAESIEA AFEKILMKSF INRKKTKINL 120
  121 KTRLKKQVEE SPPWVQNLLS FVELPPPVII LRRLFLFGFM ACWSVMNSAE AGPAFQVAIS 180
  181 FGACVYFLND KTKSLGRAAL IGFGGLVAGW FCGSLLVPMI PSFLLQQTWS LELLTSLFIY 240
  241 VSLFLSCTFL K

Type	Start	End	Confidence
Cytoplasmic	1	148	0.82
Transmembrane Helix	149	167	0.73
Non-Cytoplasmic	168	171	0.63
Transmembrane Helix	172	189	0.84
Cytoplasmic	190	198	0.83
Transmembrane Helix	199	220	0.93
Non-Cytoplasmic	221	228	0.77
Transmembrane Helix	229	250	0.89
Cytoplasmic	251	251	0.95