YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113205588, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWELRHRGGC PSPGGAVAPP PREGEAAGGD HETESTSDKE TDIDDRYGDL DPRTDSDIPD  60
   61 IPPSSDRTPE ILKRALSGLS SRWKNWWIRG ILTLTMISLF FLVIYMGSFM LMLLVLGIQV 120
  121 KCFHEIITIG YRVYRSYDLP WFRTLSWYFL LCVNYFFYGE TVADYFATFV QREEQLQFLI 180
  181 RYHRFISFAL YLAGFCMFVL SLVKKHYRLQ FYMFAWTHVT LLITVTQSHL VIQNLFEGMI 240
  241 WFLVPISSVI CNDITAYLFG FFFGRTPLIK LSPKKTWEGF IGGFFSTVVF GFIAAYVLSK 300
  301 YQYFVCPVEY RSDINSFVTE CEPSELFQLQ SYSLPPSLKA VLRQEAVSLY PFQIHSIALS 360
  361 TFASLIGPCG GFFASGFKRA FKIKDFANTI PGHGGIMDRF DCQYLMATFV HVYITSFIRG 420
  421 PNPSKVLQQL LVLQPEQQLN IYKTLKIHLI EKGILQPTLK V

Type	Start	End	Confidence
Cytoplasmic	1	85	0.91
Transmembrane Helix	86	105	0.91
Non-Cytoplasmic	106	110	0.57
Transmembrane Helix	111	131	0.73
Cytoplasmic	132	140	0.67
Transmembrane Helix	141	159	0.79
Non-Cytoplasmic	160	181	0.82
Transmembrane Helix	182	203	0.89
Cytoplasmic	204	211	0.82
Transmembrane Helix	212	232	0.90
Non-Cytoplasmic	233	239	0.85
Transmembrane Helix	240	263	0.91
Cytoplasmic	264	276	0.91
Transmembrane Helix	277	298	0.91
Non-Cytoplasmic	299	353	0.98
Transmembrane Helix	354	377	0.87
Cytoplasmic	378	461	0.89