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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|78486517, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.91
Topology Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKHSLSALL LLSALLPFSA QALTLNSSEQ QWIKDHPQIT LGSDYNWPPY DFKDSAGKHN  60
   61 GISADILDRI RQITGLKIKV RSGVWSTILE QAEQGTLDGL ACAVKTPDRA EHLYFTAPYT 120
  121 SMPLGIFMQD KSTSTSIKTM DDLTTQTVTI NRDSYMHEWL KQNYPHLKLY LVNSNAEALE 180
  181 AVSFGKANVY IGNMAVATYL IKKNYLTNIQ AVAKINHFKT DTAIAIHKDK PILFGIIKKA 240
  241 LKEISQKERN TILEKWFIKS KTTYIDLSNQ EIAWIKAHPV IKVAGEPDWA PFDFVADNTY 300
  301 QGIANDYLNL IAQKTGLNFH IDIHSWEQNL TLLKKQQVDV LPAAYFSAER TSYAKFTTPY 360
  361 YKPLTYFFVR HDLKASSLND LENTTIAMPK GYLHIDFLKQ RFPNITILET DTLNEAINAV 420
  421 IQNKAQVLYE NYAVLSYILS QSGINTIKPL APAKQANQSL HFMIRDSAPE LASIMNKALA 480
  481 SITPQERKDI EERWLTIAPN KINITLTPAE QNWLNQHAQV SFTGYPDHLP YEGFKSNANQ 540
  541 PIQHQGIVSD FIHSLESHLP LQFIPRAYKS WPDTLKAIHQ TPVDIISAEI DTPELLAQYR 600
  601 PIIPYLTTPM VIVMKNQDTF VNTLRQLTTE TIALVSNDAT SEKLLKQYPN QHFKTWPNAK 660
  661 SVLEAVAFNK ADAAILSLAK ASYLIKQNHY TSLKIVGKTD VQKQFTLFVN KRYPELFSIL 720
  721 QKSMPAITEE HGSGILSQWT KIKFASKFDY ALFFQMFSFL LVVIGIIFFW NRRLTKEVKQ 780
  781 RLQAEKRLKE NETQLQGLID SIPLMIMVTN HQGKILSANR QTLKNYQLNF QELSELNSTT 840
  841 FYSDPDDRQQ ILNALQAGEQ IHQKIISMKD ADGIPRKMML SVLPIHFNQQ PANLSIAIDL 900
  901 TERIQFEKEL QQAKEQAESA SQTKSQFLAN MSHEIRTPMN AIIGFTELLN EQVTEPRLKR 960
  961 YIRTIQAAGK TLLTLINDIL DLSKIEAGKM DLDKKAVNPH SLFDEIGQIF MINIQRKGLD1020
 1021 FLVDIDKTLP EGLLLDGVRL RQILFNLLGN AVKFTEQGYV KLKVSACDVD EHHSKLDILI1080
 1081 QVSDTGIGIP EDQQARIFNA FEQRENQDVQ KFGGTGLGLA ITQRLVNMMG GDIWVESTPG1140
 1141 QGTTFNLLIH HVDISATNQS DQPNSDERPV PQLIEFHPTT ILVVDDIDDN RALIKQNFVD1200
 1201 TDVTVYEAQN GEEAINCFHS EKGISLILMD LRMPIMNGYQ AAEIIKQKSP STPIVALTAS1260
 1261 VMTETADAPK RQHFDDYLRK PVFKADLFNI LKKYLPHEIL TPTPEFSETQ EVLSDKAKLN1320
 1321 APQFLEAIQE QLSPTQKTIL KTNNIEEIQR FAQTCEALAD QYDSKTLKTY ATQLLEATES1380
 1381 FDIKAMQQLL KYYETLEARL DKLLNDAISP 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle