YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78486248, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.90
Transmembrane Helix	15	34	0.96
Non-Cytoplasmic	35	54	0.93
Transmembrane Helix	55	74	0.96
Cytoplasmic	75	92	0.92
Transmembrane Helix	93	114	0.93
Non-Cytoplasmic	115	146	0.94
Transmembrane Helix	147	169	0.88
Cytoplasmic	170	189	0.90
Transmembrane Helix	190	211	0.91
Non-Cytoplasmic	212	228	0.88
Transmembrane Helix	229	252	0.90
Cytoplasmic	253	263	0.90
Transmembrane Helix	264	288	0.87
Non-Cytoplasmic	289	320	0.91
Transmembrane Helix	321	339	0.92
Cytoplasmic	340	347	0.87
Transmembrane Helix	348	367	0.94
Non-Cytoplasmic	368	403	0.92
Transmembrane Helix	404	429	0.84
Cytoplasmic	430	447	0.85
Transmembrane Helix	448	469	0.92
Non-Cytoplasmic	470	474	0.76
Transmembrane Helix	475	496	0.90
Cytoplasmic	497	660	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQSPTSEPA RLNPPVFFTA SGLVILLLLY AAIFPKQADG AFSHLQNVIV DNGSWFYVLT  60
   61 VAIILITVVF LGLSRYGDIK LGPDHASPDY SKITWFSMLF SAGMGIGLMF FGVAEPVMHF 120
  121 LSPPVGDAGT VEAARQAMKI TFFHWGLHAW AIYAIVALIL AFFSYRHGLP LTMRSALYPL 180
  181 IGERIYGPIG HAVDVFAVIG TVFGIATSLG YGVLQMNTGL NYLFEVPVGV ITQVILIAAV 240
  241 TALAGVSVVT GLDKGIRRLS ELNMSLAVIL MLLVLFLGST IFLMQALIQN AGSYLSDIVR 300
  301 VTFNLFAYEK TDWIGGWTIF YWAWWLAWAP FVGLFIARVS RGRSIREFVT GVLFVPVGFS 360
  361 MMWFTFFGNS AIDMILNGGL DSLGKAVSND VAIALFAFLD QFPFGAVLSF IAILMVIIFF 420
  421 VTSADSGALV VNMLCSNGRD DTPIWQRLYW VIGVGLIAAI LLLAGGLGAL QTLTIASALP 480
  481 FSIVLLIATY GLIMALRVDI AKRDSLQMNV APTPPASADG NWKERLHNIV DYPTKSVVSR 540
  541 YIQSVARPAC EEVAEELKAE DLDALVENEK DNDRVRLIVR HGEEADFIYE IRSRSHLKPE 600
  601 FTQVETAIDE MDESARYYRA EIHLREGGQD YDVMGWSKQA IIHDIIDHYH KHMHFLHVLR 660
  661