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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|78363780, gi|...
Protein type: Transmembrane
Type Confidence: 0.67
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQKKSKLKH YLKSYRIWLM FLLLFLMVPL FAITVIANHG PKMQQQTFNN LLSVAELKSY  60
   61 QITNWLQEQD KVAEVISNNK LLLQYTQNIL LTKQVAEQKK NIVELFNTLQ EFYHYESISL 120
  121 IKPNASLLLK MGDSHDLSNP KTLKIIHKSI RTKSTVKSDM TFDSGTTSHL DIVVPLFKPS 180
  181 AKKDTVMALV LLHLDPNRFI FPYLKRWPTS SQSSETLLVL QNGNRVQFLS PLRHAVNANH 240
  241 EGFIERSMNE DSLPAVVALK SRQSGFIEGI DYRGVNVLAA YYPVKNTDWM IISKVDLDES 300
  301 TKSLNDLVFW IVLVSFSALF LIGIAFLIVL KKERDLQVLE RYAEKTEAEK VLQKFYELPF 360
  361 IGMAILDAQH DKWIRFNDRL PKILRYSSQD LAQKSFNEII HPKDLAEVNA QLTDIESGKS 420
  421 EGFTTELHLL ASDDSIVFGT INVKCVRGEN GRVQYYLMTV QDVTELKHLA ELNIEHQNQL 480
  481 NALVHTIPDL VWLKDTEGLY LACNPSFERF FGAKEADIIG KTDYDFVDKA LADFFRENDC 540
  541 NAMAAEESIE NEEWLTFSEN GYRGLFSTIK TPMKNEEGQV IGVVGVARDI SKRKEDEAQL 600
  601 ERLTKLYSAM NHTNEAIIRS TDQLTLFSKV CEIAVREGGM KMAWIGTIDK ETNLVHPVVR 660
  661 FGKNSEYLDG LEISIDETAE TGQGPTALAI RQDQPYWCQD FQADSHTQPW HERAKRFGWQ 720
  721 SSASVPLHQN SEVIGTLNLY SDRKEAFDEP IQHLLLEMAI DIGFALNDFY HAKERKIIEA 780
  781 SRQEALDRLQ KIADRLPGVI YQFRLMPDGT SSFPFASDAL YEIYRVKPED VTEDSSKVFE 840
  841 VIHPEDVDDV QKSIEESAEH LTPWYQEYRV RFKNDDVRWL SGNAMPEKQP DGSILWHGFI 900
  901 TDISQHKKTE AQIELASKVF EQSREGIMIT DSNQKILMVN EAFSEISGYS VEETLGKTPR 960
  961 MLASGRHSRE FYQNVWKSIK EKGHWQGEIW NRRKNGEIFP EWLSISRGLD TSGNVTEYVG1020
 1021 IFNDISKVKE SEEKIKHLAH YDPLTGLVNR ELLMDRLNHS ISTADRNNTP LALLFIDLDH1080
 1081 FKNVNDTLGH QVGDQLLIEV GQRILKILRD EDTIARQGGD EFIVVLPDTG ENGAVHVAEK1140
 1141 ILESISDQLN LKPYKLFITP SIGIAVYPQD GKDADSLLKN ADTAMYQAKN DGRNVYRFFT1200
 1201 MEMQAHSSRI MQIESALRVA LFDQQFELYY QPQTCAKSGS IIGVEALIRW NHPEMGPVSP1260
 1261 QEFIPVAEQS GQILAIGWWV LRTAIRQIKI WSEHGKPCIK VAVNLSAVQF RYEDLPKQVM1320
 1321 KILEEEGVSP EFLELELTES VAMANPEAVI EMMDKLVGHG IKMSIDDFGT GYSSLSYLKR1380
 1381 FKVSKLKIDQ SFIRDLAVDS DDRSIIEAII SLSKALGLKT IAEGVETQAQ LDFLQEKQCD1440
 1441 EIQGFYYSKA LTPEAFDAFY EKQSQK

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