YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70887731, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRKTRRWIF HIFLCLGIIY LKIGGFSSVV ALGASIICNK IPGLAPRQRT ICQSRPDAII  60
   61 VIGEGAQMGI NECQFQFKNG RWNCSALGER TVFGKELKVG SKEAAFTYAI IAAGVAHAIT 120
  121 AACTQGTLSG CGCDKEKQGF YNQEEGWKWG GCSADIRYGL SFSKVFLDAR EIKQNARTLM 180
  181 NLHNNEVGRK ILEKNMRLEC KCHGVSGSCT TKTCWTTLPK FRQLGYILKE RYNHAVHVEP 240
  241 VRASRNKRPA FLKVKKPYSY RKPMDTDLVY IEKSPNYCEA DPVTGSMGTQ GRICNKTAQH 300
  301 TNGCDLMCCG RGYNTHQYSR VWQCNCKFLW CCYVKCNTCS ERTEVYTCK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.80
Transmembrane Helix	9	34	0.71
Non-Cytoplasmic	35	349	0.94