YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78357531, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFPTGSLVN LIAIVLGSCA GMLLGNRLPE RVRYIVFCGL GLATLVIGMQ MALKTQNPLI  60
   61 LVFSILLGGI TGELLQIERG LNSLGERLKK RLKSNNLRFV DGFVSATLLF VIGSMAILGP 120
  121 FDEALRGDRT LLYTKSILDC FASVPLAASF GSGVLFSAVP VFLYQGALTL FAGVLQPMLT 180
  181 PAMMNEIIAT GGLMILGIAL GLLDVKRIPL SNLLPSLVYA GVLSYFFM

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.86
Transmembrane Helix	7	25	0.94
Cytoplasmic	26	33	0.78
Transmembrane Helix	34	53	0.95
Non-Cytoplasmic	54	58	0.87
Transmembrane Helix	59	77	0.94
Cytoplasmic	78	96	0.89
Transmembrane Helix	97	119	0.91
Non-Cytoplasmic	120	145	0.83
Transmembrane Helix	146	175	0.70
Cytoplasmic	176	181	0.68
Transmembrane Helix	182	203	0.85
Non-Cytoplasmic	204	207	0.62
Transmembrane Helix	208	227	0.58
Cytoplasmic	228	228	0.60