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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|68536583, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQVFGLLRA VRNARTGSAK SSPDQQRHQE SGASSGSSVP SKPSAASKPS EEKKPAPAKP  60
   61 EPKKTAPAKP AQQASAPKKP AEGKTSEEKK PAPVKQEPKK ATSKEPTRSP IKLSAGGPPK 120
  121 APSAPKPPKA SSQKQEPRKA STASQDPKKS TTAAKALKAD KNKKQTSAPP KKKAATPRPA 180
  181 AAAPAIKLGN VGAPPAPGVA PGVARKAPIP AKASAAKPAP KQAAKPVSKE AAKPVAKETP 240
  241 AAKATPPAKP KPEQKPAPKK APKKATQPKA EQKTVTVPAA KQAPKPVAKA KPKTVPPAAE 300
  301 KSASQPKKQP EAKQVTTAQP APQQTSAPRR NNVPEALTIP PENKTVKKDR RARLRQVKGL 360
  361 DGLRGLAVLA VVIYHFFGDI LPGGYLGVDL FFVLSGFLIT SLLVREYRVN NTISLKDFWI 420
  421 RRFRRILPAA LVTLFIVTAI VTAIGGDIAV GIREQFLGTL FFVNNWTQIA TSQSYFSENE 480
  481 IQVFAHYWSL AVEEQFYIIW PLVTLGIFVF TQRRLRRSPR RIPMLVTAVL AVLSAAIMAL 540
  541 LFTPGEDPTR VYYGTDTHAF GLLIGAFLSL AVTSTRNDPR VDSWPSAGKF EARAAGAIGA 600
  601 LALVGYVFQL LLMGDDLAVT YRGGLLLTSV LGVLMIWGVI RETGPLTIIF RTNVMRWLGQ 660
  661 RSFSLYLWHW PVIMILRALF DADGHMDHKW ILGLVAVPIA LVISEISYQH VENPFRRRGY 720
  721 KQTWKDYWSS RPTYHEINEG FKKVAWPVVP LLVVACAGGV IYGVVNSNDK TALEQELDQL 780
  781 QRMNQQANKG NAPAPATPPP PKEEKAAAVQ GKDITAVGDS VMLAASEALN TSYPGIYIDA 840
  841 DVSRHYTAGM DVLRQLNDSG KLRKNVFLGF GTNGPAFPDQ LEEMINLIGP DRQIFMAMPY 900
  901 GDREWMAQSR QDVLDAAKTH DNVYIADWCG HAQAHQNMLF EDGVHPMPEG AQEYAKAFDE 960
  961 ALAQAADHKK KTTTTCA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle