YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68264132, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRMNSQNPH DRSFPRKDGR DFADFIAGSH RMDTENIPIP GDDRDEERLG NSRFADEPQA  60
   61 AKHPTVSPDS PEAELVEDRR AETSPTVEEK GDSYVQERNT ARATTGTEKP LDEDHEPDGE 120
  121 TETDDHPGLR SHSAKVKKKA KKPAKKSPLD EELNPELRDR AEVIGTTGRW FAGWCLRFII 180
  181 IAAALYLGFQ VFGKLWAGIL PVCLSVIVCT VLWPVVRLLR KAKIPNSLAV LISILGFFAL 240
  241 IIGTFAAIAP SAVDQGKTIV NQASDGIGRI QDWLQGPPVN LQESQFNDGV QQITDWLQNK 300
  301 SGDIATSIAA FGTETASLLV TLFVMLVLTF FFLKDGENFL PMLRRVTGRR VGWHLTEVLT 360
  361 RCWNTLGGFI RTQAIVSAID AIFIGLGLVL LNVPLAGPLA ILTFFGGFIP MVGAFVAGAL 420
  421 SVLIALVAVD FNTAVMALLL VVAVQQLEGN ILQPVLQSRA MNVHPVIILL SVTLGSTLFG 480
  481 IIGAFLAVPC AAMIAVILRY MGDLTDLATG EKTSRDIEFA TTAGSLTGEQ SERAAQRWQE 540
  541 LRKAMMLNSS DKTDSAESSK ATTTAAVSDA PTETAADADE GASSLSDKRA QIRGKVQSIY 600
  601 KSLRGNNE

Type	Start	End	Confidence
Cytoplasmic	1	169	0.99
Transmembrane Helix	170	189	0.93
Non-Cytoplasmic	190	195	0.80
Transmembrane Helix	196	216	0.95
Cytoplasmic	217	227	0.83
Transmembrane Helix	228	249	0.94
Non-Cytoplasmic	250	310	0.97
Transmembrane Helix	311	333	0.88
Cytoplasmic	334	368	0.84
Transmembrane Helix	369	396	0.72
Non-Cytoplasmic	397	398	0.39
Transmembrane Helix	399	420	0.78
Cytoplasmic	421	421	0.32
Transmembrane Helix	422	447	0.71
Non-Cytoplasmic	448	465	0.73
Transmembrane Helix	466	498	0.76
Cytoplasmic	499	608	0.88