YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74095363
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRQNVRTLS LVVCTFTYLL IGAAVFDSLE SPTEAKRWEF LQTVKNNFVR KYNVTDEDFR  60
   61 VMEIVIIENK PHKAGPQWKF AGAFYFSTVV LAMIGYGHST PVTIPGKAFC MGYAMVGIPL 120
  121 GLVMFQSIGE RLNKFASVII RRAKRASGAR CTDATEMNLM LATGMLSSII ITTGAAVFSR 180
  181 YEGWSYFDSF YYCFVTLTTI GFGDYVALQN DQALTNKPGY VALSLVFILF GLAVVAASIN 240
  241 LLVLRFMTMQ AEDAKRDEQD AQNLAGNAQP VTFDDESTYN MHGKLLENNY TTENDETASL 300
  301 CSCTCMGGTR CLNHEQFVDP DFQPTDIIES TLCLKRASV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.79
Transmembrane Helix	8	26	0.76
Non-Cytoplasmic	27	80	0.70
Transmembrane Helix	81	100	0.89
Cytoplasmic	101	108	0.58
Transmembrane Helix	109	129	0.90
Non-Cytoplasmic	130	158	0.69
Transmembrane Helix	159	179	0.91
Cytoplasmic	180	188	0.57
Transmembrane Helix	189	208	0.81
Non-Cytoplasmic	209	220	0.79
Transmembrane Helix	221	244	0.89
Cytoplasmic	245	339	0.85