YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71051813, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.58
Transmembrane Helix	7	28	0.61
Cytoplasmic	29	39	0.78
Transmembrane Helix	40	61	0.89
Non-Cytoplasmic	62	95	0.95
Transmembrane Helix	96	118	0.89
Cytoplasmic	119	131	0.86
Transmembrane Helix	132	151	0.96
Non-Cytoplasmic	152	157	0.91
Transmembrane Helix	158	179	0.95
Cytoplasmic	180	199	0.88
Transmembrane Helix	200	225	0.88
Non-Cytoplasmic	226	237	0.84
Transmembrane Helix	238	257	0.94
Cytoplasmic	258	266	0.81
Transmembrane Helix	267	286	0.85
Non-Cytoplasmic	287	315	0.86
Transmembrane Helix	316	337	0.89
Cytoplasmic	338	382	0.85
Transmembrane Helix	383	402	0.73
Non-Cytoplasmic	403	419	0.62
Transmembrane Helix	420	444	0.83
Cytoplasmic	445	450	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGACLGACSL LSCASCLCGS APCILCSCCP STRNSTVSRL LFTGFLFLGV LVSIIMLSPG  60
   61 VESQLYKLPW VCEDRAQQPV VLQGPLDCGS LLGFRAVYRM CFATAAFFFL FMMLMICVRS 120
  121 SRDPRAAIQN GFWFFKFLIL VGITVGAFYI PDGSFPKIWF YFGVVGSFLF ILIQLILFID 180
  181 FAHSWNQRWL CKAEECDSPV WYAGLFFFTF LFYLLSIAAV ALMFVYYTES GACHEGKVFI 240
  241 GLNLTFCVCV SIIAVLPKVQ SAQPNSGLLQ ASVVTLYTMF VTWSALSNVP DQKCNPHLPT 300
  301 KNGTGQVNLE DYSTVWWDAP SIVGLVIFIL CTFFISLRSS DHRQVNSLMQ TEECPAEMVQ 360
  361 QQQVAVGDGR TYDNEQDGVT YSYSFFHFCL VLASLHVMMT LTNWYSPGET RKMISTWTSV 420
  421 WVKICASWAG LFLYLWTLVA PLLLPNRDFS