YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78170683, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTPHCHLSV VIPLYNEQES LPELLQQLEQ ALHHPSLQAL FAEPLEYEII MVDDGSTDGS  60
   61 ASSIRRLATK HCNVRLISFQ RNFGKTAALS AGFAASSGEL VCTLDADLQD DPSAIAALIT 120
  121 KLHEGYDLVS GWKQQRRDPL SKTIPSKFFN AVTRLFTGLT IHDANCGLKL YRHDVVKRLE 180
  181 LHGDMHRYIP VLAAWMGFAI TELPVPHHPR KYGTTKYGFS RFIAGLLDFL SVLFITRYLR 240
  241 RPLHFFGTAG LLSALCGFGI SLYVTLDKVL LHKPVSNRPI LFLGILLMIL GVQLFSTGLL 300
  301 GELLSTTNNR HSGFIIRETF NVTDEQVQAL RQ

Type	Start	End	Confidence
Cytoplasmic	1	216	0.78
Transmembrane Helix	217	238	0.85
Non-Cytoplasmic	239	243	0.47
Transmembrane Helix	244	266	0.91
Cytoplasmic	267	279	0.48
Transmembrane Helix	280	301	0.91
Non-Cytoplasmic	302	332	0.54