YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78169604, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRRSRARAQ LKLLTAPWRG PFTALATLIL AGASGYRLTE GWDWGDCLWM VLITVSTIGY  60
   61 GEVETLSPQG RLVTVLIVVG GLVVVQLAIQ RVLGLKESGY FRRVKEFRFH RMLERMHDHV 120
  121 ILCGYGRIGQ EIAAQLLRDN IPLVVIETDS FRRDVAESKG LKVLQADATL DETLLDAGLD 180
  181 RCQSLVAALP GDASNLYVIL SARDLRPDCR LIARASSDEA TAKLRLAGAS VVVSPYVAGG 240
  241 RVMAASALRP LALDFMELLA GSNFEIEEFQ LSNNPQYLSA IQGRSLAELE LGRRSGALVL 300
  301 AIRDQGQLIA NPGGDMELAP GQLLIVLGSK LQLSRFQQLL GEAVDSIETM PG

Type	Start	End	Confidence
Cytoplasmic	1	15	0.57
Transmembrane Helix	16	36	0.52
Non-Cytoplasmic	37	352	0.72