YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78166746, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNLLLGGTM IETASIHLSG PLSEASPFRL RHPGAVILSA IISLLVSMGI WSFMPGWVDS  60
   61 LNVLIWGNPT RSFPVWMHQV LDMFFLIYLA GSLFPFLFFI GLTMLPERRI AGNTSLPFVS 120
  121 VIIPSFNEED SIAQCIESAL ALDYPAYEII IVDDGSRDLT LPIIERYDVS VIRLRTNRGK 180
  181 VEALNRGIEK AKGEIIFFTD SDSSLDPKVL RYLVAGFSDD TVGAVAGMVL PKRHNSYLLR 240
  241 MQTIEYIYGQ SIIKKAQLKS GGAVSICPGP ATAFRRSVLL ETGGYRNRTL AEDFDITLEM 300
  301 MELGYRAVYE PRAVSYTSAM TGWKGLRKQR IRWSRGHLQV YREHRGMMFS DIGGPISLFW 360
  361 MPWSLFIGYG SAFLEMAFLG VYPLLVIISS MPLLFLKLGL SYMVILECIS AMQGIIPLMQ 420
  421 ARRLTPSLAL ASFTTQPYRI VLSYMRIVAY THEMQERSNT W

Type	Start	End	Confidence
Cytoplasmic	1	33	0.94
Transmembrane Helix	34	54	0.93
Non-Cytoplasmic	55	83	0.87
Transmembrane Helix	84	105	0.90
Cytoplasmic	106	351	0.98
Transmembrane Helix	352	379	0.71
Non-Cytoplasmic	380	380	0.31
Transmembrane Helix	381	415	0.65
Cytoplasmic	416	461	0.65