YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78166611, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.54
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRSTPMKKR TAALLIVSQA VHSGGGVFWI LFAILFSWPL SSLAAESKAA EVFQRVSKSV  60
   61 VVVHARNDSG DVLVMGSGVV LPGGTVATCH HVVSDARKIT VDYAGGEYPA VVRYSDIERD 120
  121 ICSLTVQGLK APAVSMGSMA ALAVGERVYA VGTPQGYPLT LSEGIISGFR EVRGHRYMQT 180
  181 TAPISSGSSG GGLFDEEGLL VGMTTFFLKD AQQMNFAAPV EWLAALPEGR AGRVENKRKD 240
  241 EIRGIRARAE LGDADAQYTL GACYSEGDGV RKDPAEAVRW YRLAARQGNA DARNSLGWAY 300
  301 REGNGVKRDY DRALLLFRMA AEQNEQYAQN NLGLMYMNGE GVKQDNAEAF KWFCMSAAQG 360
  361 NGYGRCNIGE MYVKGQVVEQ NYEEAMKWFR LAAEKDGNDA AYWIGWLYEE GKGVPADPDE 420
  421 AARWYRIAAG STDPNGLLSI GEMYEKGLGV PGSISNAEKW YRKACRAGEK DACERLKRLA 480
  481 GK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.53
Transmembrane Helix	12	33	0.48
Non-Cytoplasmic	34	482	0.96