YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78166219, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITLSVVVPF YNERESIPEL VGELSGALSD PLLHGLLPEP FSHEIILVDD GSTDGSGEAA  60
   61 KAIAETVPEV KLISFRKNSG KTAALSAGFR AAEGLFICTL DADLQDDPRS IRPLLEKLLE 120
  121 GYDLVSGWKL HRNDPVTKTV PSRIFNAATR LFTGVRLHDI NCGLKLYRRE VPESIELHGD 180
  181 MHRYIPVLAA WKGYRIAELP VLHRRRRYGR TKYGSARFLK GLFDFFAVLF ITRYFRRPMH 240
  241 FFGMAGLVSF LLGFSVSAYV TLDKVLNNRY ISNRPILFLG ILLLILGVQL FSTGLLGEML 300
  301 STTSGARESF LIRDTLNLTP EQQQKISE

Type	Start	End	Confidence
Cytoplasmic	1	212	0.94
Transmembrane Helix	213	234	0.81
Non-Cytoplasmic	235	240	0.75
Transmembrane Helix	241	262	0.94
Cytoplasmic	263	275	0.78
Transmembrane Helix	276	296	0.91
Non-Cytoplasmic	297	328	0.90