YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77992951
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESKEEDVRV GANKFAERQP IGTAAQSQDK DYKEPPPAPL FEPGELSSWS FYRAGIAEFI  60
   61 ATFLFLYITV LTVMGVSKSD SKCKTVGIQG IAWAFGGMIF ALVYCTAGIS GGHINPAVTF 120
  121 GLFLGRKLSL TRAVFYMVMQ CLGAICGAGV VKGFGKTLYM TKGGGANVVA HGYTKGDGLG 180
  181 AEIIGTFVLV YTVFSATDAK RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS 240
  241 LGAAIIYNKD KAWDDHWIFW VGPFIGAALA ALYHVVVIRA IPFKK

Type	Start	End	Confidence
Cytoplasmic	1	50	0.78
Transmembrane Helix	51	76	0.79
Non-Cytoplasmic	77	90	0.73
Transmembrane Helix	91	114	0.84
Cytoplasmic	115	132	0.62
Transmembrane Helix	133	155	0.88
Non-Cytoplasmic	156	177	0.79
Transmembrane Helix	178	197	0.80
Cytoplasmic	198	207	0.89
Transmembrane Helix	208	228	0.90
Non-Cytoplasmic	229	256	0.88
Transmembrane Helix	257	278	0.91
Cytoplasmic	279	285	0.83