YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RF1M_BOVIN
Protein type:	Globular with Signal Peptide
Type Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRRHLFAWL FRHLSLNGHL QCHVHRHSHQ LTQIPLDTRL WVFRRNRNHT VHRLLNKNCS  60
   61 RRYCHQDTSM LWKHKALQKY MEDLNKEYQT LDHCLHHISA SEGDRRSLTR RHAELAPLAV 120
  121 IYKEIQEAEQ AIEELESMCK SLNKQDEKQL QELALEERQT IAQKINMLYS ELFQSLLPKE 180
  181 KYDKNDVILE VTSGRTTGGD ICQQFTREIF DMYQNYSSYK HWRFELLNYT PADYGGLHHA 240
  241 AARISGDNVY KHLKYEGGIH RVQRIPEVGL SSRMQRIHTG TMSVIVLPHP DEVDVKVDPK 300
  301 DLRIDTFRAK GAGGQHVNTT DSAVRLVHIP TGLVVECQQE RSQIKNKEIA LRVLRARLYQ 360
  361 QIIEKDKCQQ RSARKLQVGT RAQSERIRTY NFTQDRVTDH RIAYEVRNIK EFLCGEKCLD 420
  421 QLIQRLLQSA DEEAITEFLD ENLKSVK

Type	Start	End	Confidence
Signal Peptide	1	18	0.55
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	447	0.99