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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|71370785, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.98
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMEMRMKMLW LLALVFSSVI CVEAQQRGLF PAILNLASNA EISTNATCGD PDPEMFCKLV  60
   61 EHVPGRRIRN PQCRICDANS QNPKEQHPIT NAIDGTNLWW QSPSIKNGRQ FHWVTVTLDL 120
  121 RQVFQVAYII IKAANSPRPG NWILERSLDG VNFQPWQFYA ISDTECLTRY NITPRIGPPT 180
  181 YKRDDEVICT SYYSRLVPLE HGEIHTSLIN GRPSADDLTP ELLEFTSARF IRLRLQRIRT 240
  241 LNADLMTLSY RDPKDVDPIV TRRYYYSIKD ISVGGMCICY GHAQSCPWDP VTKKLQCVCE 300
  301 HNTCGESCNE CCPGYHQEPW QPGTLSDGNT CEKCNCHNKA DDCFYNQTVA DLKLSMNTHG 360
  361 QFTGGGVCVN CRHNTAGVNC ETCADGYYRP HQVSPYAEEP CVECQCDMRG SVSPVCIRDD 420
  421 NHANPDAGLS PGQCVCKEGF AGEKCDRCAF GFRDFPVCSR CECNLDGSHN TDPCMECVCK 480
  481 ANVMGSHCDL CKQGFYNLQA SNPEGCTECF CFGVSDVCES STWFSSSVVH RDGVLHRLHQ 540
  541 TSISFWSPVS DENLIISNRS TDADPSSVWT WAAPEPFLNN KLTSYGSFLN YSVAYDTSEE 600
  601 NVDKTLRSHF SVIIEGNGRT LRQAQSARLL LNAHTHQRVF VQMLPQIFID SHSGRSVQRD 660
  661 ELMTVLADVA ALRVRAELED SAEGTLRLSH VSLGVGDSNS DVSKISLDVE HCECPWGYSG 720
  721 TSCELCIPGF YRVGGILFGG NCLPCECNDH ATECDINGEC LGCAHNTTGP HCDQCLPGFY 780
  781 GDASEGTPDD CQRCSCPLTL ASNNFSPTCQ LQAPGEFICD QCQSGYTGDK CQRCADGYFG 840
  841 EPVVPGQRCS PCECNGNVDP SEAGRCDTHT GECLKCVGHT AGPHCERCRD GYYGDAIQEK 900
  901 NCQACGCYSN GSLSTICNLI TGQCECKHNV VGKTCDRCQE GYHGINSGEG CRPCECNQSG 960
  961 ALSASCDEEG RCQCITGVTG DKCDRCHHGY YNFKENGCTA CDCAHTHGNC NGQTGECICP1020
 1021 PHTHGLKCEQ CDEGHWGHDG VSGCKVCNCS VVGSSSSQCD LSSGQCVCAL QFSGLTCDRC1080
 1081 ALGYRNFPQC SACDCNPNGT RAQFCDEALG VCGCEDHGQC SCKDNVGGRG CDECKSGSFG1140
 1141 LSALNPAGCS PCFCFGLSDV CEELSGLVRA PIVLGSSPAL LRVVSQSDLQ GTLEGVYYSD1200
 1201 DEMLLDVDQL NKLSLLTGPY YWRLPQKYNG NKLLSYGGRL SYTLTFFAQD GVGLANQEPQ1260
 1261 VLMRGGHLRK LVIYTDASAP ANGIRSTQEH ALTEHKWKYF NSVSDEAVSH ADFMSVLSNL1320
 1321 EYVIIKASYG SGLQQSRISN ISMETALEAD ELPEGGDVAR LVEICECPPG YAGLSCQECA1380
 1381 PGYYRQAVSE LNMKGRNRPL IQPCVPCRCS NHSQSCDLHT GQCLGCQHNT AGEHCHVCAA1440
 1441 GYYGKVQGSV SDCSLCACPL RGQSFSSTCV LEGAGDFRCD RCEEGYEGRY CERCAVGYFG1500
 1501 NPSEPGGRCQ VCACSESGSV HSVCDAHTGR CECKPGVRGH LCDQCEERHV LVHEQCVSCN1560
 1561 DSCTGVLLDD LDALDVSITS VNLTGVILAP YSQLMTIQNQ TRELTSLMSW NQTPDYQLTA1620
 1621 GEEHSRNLSG QITDLQQQVQ SVFEDSGDVL LTSEQRFTQG KQLLELINNI HSAIHGLVEQ1680
 1681 VSSVNVTLDE GLDEANSTFL LEETSETLEK IRSFNLTHCR NAAEIQLSSA VSVLEKVEDE1740
 1741 ISKPYRNNQI RRENISTTLN THNLSLQQVQ ESLYTAKTHN NQSRRLLQDI QSNTHTLTIS1800
 1801 RNNVSSLNHE LETQVQEAQD LLTDALNIAE DMDNGATTLD ELKNDLELWS PSLRKHVDSL1860
 1861 VMDLTKRDAL QLVYRAEDHA QALSKQAQAL NSSLSEVSSA SVNISIATRT NANIRENIQL1920
 1921 AADLALAANQ NASSALNMTS LTEQEKRRLQ KSSEILDRAA LLKNHTDGLM QNVSAVTSRL1980
 1981 SLVAANIQNF TQMLPEALGI LRNLPEGSRA EILQVKQQTE AANASLQEAL ERLRDYRLKL2040
 2041 DESSSALGSA DNSTQRTNQL LRDSQDTANA AGSRLSEADV KADRLLERLK PLQTLGETLS2100
 2101 RNLSDIRELI SQARKQAASI KVAVSADRNC VRAYRPEVTS SNFNTLTLTM KTSEPDNLLF2160
 2161 YMGSSSSEDF MALEMHDGKV SFLWDAGSGH NRLEYPDVQI NNDKWHRINA TRFGRHATLT2220
 2221 VQQTDSEPLP AVKSSAAGSA TVMDVNKHTW VYVGGLGGQV KKSPAVKITH FRGCMGEALL2280
 2281 NENNIGLWNY AERQGECGGC FRSPRTEDTS FHFDGSGFSV VEKSLRSMST SVVMFFKTLS2340
 2341 PNGLLLYLAS NGTRDFLSIE LVEGKVHLTF ELGSGALTMT SSRTYNTGSW YRIALQRNKR2400
 2401 KGHLSVMAAS NPSEREVLEA EAPGQASDLN RSDLDPIYIG GLPASRPIRR QVVARSFVGC2460
 2461 MKNVEIARTN FDLLREAYGV KKGCVLKPIR SVSVFGGGFL EMPAVLLSSH TEIMSTFSSR2520
 2521 RDSGVILAGF SRSSRHTQQP LLLLLLVSGG LELRVSVSDG AAVQKAELRG SFSDGHEHSL2580
 2581 ILQRNKRTIT VVVDEGIQAS LKLPASAEKS LTLERLYIGG VPPAEGDTHT LTPAFYGCIR2640
 2641 NTAVDGMLLD LSAALRYEQV DMDSCLLEPR PRRVLLPDDP EPTSDPDTRP LTPAAAELSA2700
 2701 LTPNSGSCAS ADHTQTIPES HQFGLSRHSH LIMGFKNRTV RTSFAVKLSV RTFAHSGVLF2760
 2761 YMANTNQQDY AVLQLQAGRL HLSCDLGKGA ASATLKNTIS DGRWHTVKAE FSKKTVVVSV2820
 2821 DGIESDHIST KGHTLDVEGK LYVGGLPPTY TAKRIGNVTH SVAACVQDLT FNGVPMNLNN2880
 2881 PLSSHATGFC FSNAQDGTFF NGSGYAAFMK EGYNVGSDVT VSLEFRSTAP DGVLLGISST2940
 2941 KVDAIGLELL NGQVVFNVNN GAGRISVSSR SSVSMCDGRW RTLVAKKQKH SLSLTVDGVT3000
 3001 VNAENPHSSS TSAETKNPIY VGGHPADVKQ NCLSVRQSFR GCMRNLRVFK GHVTDVLDFS3060
 3061 SAFTLLHVSP HSCPA

YRC Informatics Platform - Version 3.0
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