YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPPP_CARHZ
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSFQALILG LVQGLTEYLP VSSSGHLVLL QKIFGLKENV LLFDILVHLG TLVPLLIIFR  60
   61 DEILAIIKKP WGRLPLLIIA GTVPTALIGL GFKDFFERLF VSGSTLGIEF IITGLILWLA 120
  121 ERQKSGRKNL EKTTFLDAIF VGVAQGLAIL PAISRSGLTI SGALIRGLNR EWAAKFSFLL 180
  181 SIPAILGAAV LDLKSFVEQN ANLAGIDLMP FIVGFFAAML SGYFAVKFML EILRKGKLTW 240
  241 FSYYVWILGV TILVLQAAGK F

Type	Start	End	Confidence
Cytoplasmic	1	8	0.62
Transmembrane Helix	9	30	0.56
Non-Cytoplasmic	31	39	0.70
Transmembrane Helix	40	59	0.89
Cytoplasmic	60	70	0.74
Transmembrane Helix	71	92	0.91
Non-Cytoplasmic	93	98	0.74
Transmembrane Helix	99	120	0.92
Cytoplasmic	121	171	0.61
Transmembrane Helix	172	193	0.77
Non-Cytoplasmic	194	205	0.66
Transmembrane Helix	206	226	0.90
Cytoplasmic	227	239	0.63
Transmembrane Helix	240	259	0.94
Non-Cytoplasmic	260	261	0.73