YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78045177, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYDLVVIGAG MSGLMAAGAG ARKQKKVLVV AKGQGVLSLS SGCIDFNPEL LEREEGSPYF  60
   61 KVQDVVEESF SFFKGLVKRC GLNYVGSPSE QTRILTTLGT VKNSCLVPES MFLENPESYE 120
  121 RIIAVGFKGY FDFSPKMFLY YAKKSGIFPG LKETEEVYFE TGTITVNTTW LAQALARGNL 180
  181 KEKLIAFLKP YAGPKTLMVF PAVLGDLPED RLFKEMEDVL GVRVVELSGG LPSFPGQRLN 240
  241 KALVSTLKEM GVNFLFNAEV IGYKKDLRQV TSIKIKESGG RVREISGKAF VLATGSFWGK 300
  301 GLWANKEEIC EPIFQSKVYL PRNFAEDFNF LASGIYTDEY LRPIKELENL YAAGSILANS 360
  361 NYLKNNSGLG LALASGYKAG LLALGDREVR RNA

Type	Start	End	Confidence
Signal Peptide	1	21	0.84
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	393	0.99