YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77997244, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.96
Transmembrane Helix	14	35	0.92
Non-Cytoplasmic	36	42	0.78
Transmembrane Helix	43	65	0.84
Cytoplasmic	66	81	0.95
Transmembrane Helix	82	105	0.92
Non-Cytoplasmic	106	111	0.89
Transmembrane Helix	112	134	0.92
Cytoplasmic	135	141	0.90
Transmembrane Helix	142	164	0.90
Non-Cytoplasmic	165	190	0.91
Transmembrane Helix	191	211	0.93
Cytoplasmic	212	229	0.89
Transmembrane Helix	230	250	0.89
Non-Cytoplasmic	251	259	0.80
Transmembrane Helix	260	280	0.92
Cytoplasmic	281	289	0.83
Transmembrane Helix	290	312	0.87
Non-Cytoplasmic	313	318	0.74
Transmembrane Helix	319	339	0.89
Cytoplasmic	340	358	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTSAKLSF VDRYLTVWIL LAMVLGVAIG YFFPGIAGLL DRLSIDTTSI PIAIGLIWMM  60
   61 YPPLAKVRYE EVNKIFRGGS KIFLFSILQN WIIGPVLMFI LAYIFLRNYP EYFMGLVLIG 120
  121 LARCIAMVIL WNALAKGDAE YAAALVALNS LFQVFFYSTY AYFFIKVVPG WLGYDTKGVV 180
  181 LDISMAEIAK SVFIYLGIPF LAGVITRFSL LKSKGREWYE TKFIPKLSPT ALYALLFTIV 240
  241 VMFSLKGQYI VKLPLDVVRV AIPLIAYFVL MFFISFYISA KAGFGYARTA TLSFTAASNN 300
  301 FELAIAVAVA TFGLNSGQAF AAVIGPLIEV PVMLWLVNMA LKLKDKYFGE GEQYYEWF