YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77997222, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAFIGELIG TAIIILFGGG VVANVVLNKS KGQNSGWIVI TAGWAFGVAV AVYATGKLSG  60
   61 AHLNPAVTIA LAYLGQFPWA KVPMYIVAQI LGAFIGAVLV WLAYLPHWAE TDDPGAKLGV 120
  121 FSTGPAIRNY AANLLTEIIG TTALVFGVLA LGVNKEPAAS GLAPLLVGIL VWALGLSLGG 180
  181 PTGYAINPAR DLGPRIAHAI LPIPGKGSSD WAYSWVPVIG PIIGGLIGAI LYQMVF

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.79
Transmembrane Helix	8	27	0.97
Cytoplasmic	28	34	0.81
Transmembrane Helix	35	55	0.92
Non-Cytoplasmic	56	60	0.71
Transmembrane Helix	61	79	0.74
Cytoplasmic	80	84	0.71
Transmembrane Helix	85	105	0.93
Non-Cytoplasmic	106	129	0.79
Transmembrane Helix	130	153	0.88
Cytoplasmic	154	160	0.74
Transmembrane Helix	161	184	0.85
Non-Cytoplasmic	185	210	0.83
Transmembrane Helix	211	232	0.92
Cytoplasmic	233	236	0.56