YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78045090, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.80
Transmembrane Helix	7	27	0.82
Cytoplasmic	28	56	0.91
Transmembrane Helix	57	78	0.90
Non-Cytoplasmic	79	86	0.73
Transmembrane Helix	87	109	0.91
Cytoplasmic	110	126	0.91
Transmembrane Helix	127	151	0.89
Non-Cytoplasmic	152	159	0.82
Transmembrane Helix	160	179	0.95
Cytoplasmic	180	189	0.76
Transmembrane Helix	190	208	0.94
Non-Cytoplasmic	209	225	0.89
Transmembrane Helix	226	245	0.95
Cytoplasmic	246	252	0.89
Transmembrane Helix	253	274	0.88
Non-Cytoplasmic	275	292	0.89
Transmembrane Helix	293	313	0.94
Cytoplasmic	314	329	0.89
Transmembrane Helix	330	353	0.87
Non-Cytoplasmic	354	417	0.86
Transmembrane Helix	418	440	0.69
Cytoplasmic	441	462	0.90
Transmembrane Helix	463	482	0.95
Non-Cytoplasmic	483	489	0.82
Transmembrane Helix	490	514	0.86
Cytoplasmic	515	520	0.95
Transmembrane Helix	521	543	0.90
Non-Cytoplasmic	544	555	0.85
Transmembrane Helix	556	577	0.91
Cytoplasmic	578	595	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALELIIGA ALILVLAYRF YGSFLAAKVL TLDEMRKTPA EKYNDGKDYV PMNKWVAFGH  60
   61 HFAAIAGAGP LVGPVLAAQF GYLPGTLWIL IGSVLAGAVH DMVVLFASIR HGGKSLSEIA 120
  121 KKEVGPVAGV ATGIAVFFLI ILTMAGLGLV VVNALFKNPW GVFTIAMTIP IAIFIGLYMH 180
  181 KIRPGKIGEA SLIGVILVLL AVFLGPYVKN SFLAPYLTLS DKTLEILLPA YGFLAAALPV 240
  241 WLLLAPRDYL SSYMKIGTIL ALALGIIIVN PQIQMPAFTK FIHGGGPIIG GKVWPFISIT 300
  301 IACGAISGFH ALVSSGTTPK MIANEKDIKI VGYGAMLTEA FVALMALIAA TTLMPGDYFA 360
  361 INTKPEIFKT LNMPVVHLPE LSKLVGEDVA GRPGGAVSLA VGMANIFASI PGLKHLMAYW 420
  421 YQFAIMFEAL FILTTIDAGT RVARYIAQDL LGMIYEPIKE SKSTVLAVVL SAFVSFTWGY 480
  481 LIYGGDIKTI WPVFGVANQT IGVLALAIGT SMILQKSQKR IYALTTFLPM TFLFVTVMDA 540
  541 GFINLTKVYL PQGQMVPAVL VAIMLSLSII VMVSSIIKWL NILSKPQQPE VAVEN