YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77997201, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.62
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQKIIKKIF LVTLIVAAIL LPHEATTLAR LTDRFIIDSV WEGQSSKVFQ AVLIGTGYYL  60
   61 MRDIGALIFI FYFFETVNKL KPILKTFLSF LLLISFYGYL YYKFQIGDFV FGILIGCVLF 120
  121 FLFSGLKTPE NIFWSKSFLV LQVLLAFSWL KYSPFINKFF YSFGTPAEEV SLVAQFYGAD 180
  181 TALNWITVIM FFIIMMTALI STFLISIYST QMEIISRQKE NELEVERYRL QVQEARVFQE 240
  241 LHSLVHDLKT PLMTIQGLSS LIGLMVDSPK LQEYVQKIEQ AVENVNKMIS EILYDDVRKT 300
  301 ITVEELINYV RAHVFPKYTG QGIFFELLDQ KEKLLINHIR VARSLINVIE NAFAATANKP 360
  361 DGRVTIKTYK EGNYICFEIA DNGVGIPPEI QEEIWTWGFS LKEKKSGLGL PFVKRVVENH 420
  421 NGYIQLHSEV NKGTTVKIFL PLGGYGESTH N

Type	Start	End	Confidence
Signal Peptide	1	29	0.61
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	50	0.95
Transmembrane Helix	51	74	0.85
Cytoplasmic	75	82	0.87
Transmembrane Helix	83	101	0.94
Non-Cytoplasmic	102	105	0.84
Transmembrane Helix	106	126	0.89
Cytoplasmic	127	132	0.86
Transmembrane Helix	133	153	0.87
Non-Cytoplasmic	154	184	0.89
Transmembrane Helix	185	208	0.92
Cytoplasmic	209	451	0.92