YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78045013, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	22	0.97
Transmembrane Helix	23	45	0.92
Non-Cytoplasmic	46	52	0.81
Transmembrane Helix	53	76	0.88
Cytoplasmic	77	89	0.87
Transmembrane Helix	90	112	0.90
Non-Cytoplasmic	113	127	0.81
Transmembrane Helix	128	148	0.92
Cytoplasmic	149	154	0.81
Transmembrane Helix	155	176	0.91
Non-Cytoplasmic	177	192	0.94
Transmembrane Helix	193	214	0.91
Cytoplasmic	215	226	0.86
Transmembrane Helix	227	249	0.92
Non-Cytoplasmic	250	257	0.79
Transmembrane Helix	258	279	0.85
Cytoplasmic	280	304	0.86
Transmembrane Helix	305	327	0.88
Non-Cytoplasmic	328	332	0.89
Transmembrane Helix	333	355	0.94
Cytoplasmic	356	374	0.98
Transmembrane Helix	375	396	0.92
Non-Cytoplasmic	397	402	0.85
Transmembrane Helix	403	423	0.92
Cytoplasmic	424	441	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKGEDYALA RIPMEERRPM WEVFMIRFGA VVTLSQFMLG AALGYGLTLK DALFATILGS  60
   61 VLLEIISFLN GVAGAWEGLS TSLLTRWAGF GRLGSSLIGL IVGISCIGWF GIQNTIFAQG 120
  121 LSQAFGGAVS TKIMSVITGI LITLLVVYGY KMLSYTANIA VPGFLVAVGI ATYHLLSKYD 180
  181 LNTLLTSPPP GPALNFGVAV TMVAGGFMVG AVVTPDLSRY NRNAKDVFWM TLLSIFAGEL 240
  241 LITFIAVLMS HAVKSADVIT IMLNLGGWIS AALVIFSTIK INDLNLYAAS LGIANFLDAV 300
  301 FRVKISRAVL TIIIGLLGTL GSVLGILDKF VNFLVILGIA VPPVGGIMVV DYFILKRYRK 360
  361 ELEESRAYGR LPREVEDWNP IAIVSLVLAF LVGYFYKGGL NQALNSLIAG MIFYFVLMKL 420
  421 YIAFSPAKNA KFIKKSEVGE V