YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044979, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQWLIFLII AARLAGFFGI SPLIIPVRGV PPAVKGFFTL IVAYLLLPTV AGSFTATDVQ  60
   61 RNFFLLLIGE SLIGLLLGFV TLIFANLYLV AGQYMDLTSG LSAATLFDPL TQTNAGLMAN 120
  121 FIYLYGILNY FLANGHHRLL TFLTVSFELI PPGKGLLHPG LSELLIKIFA LVMLVAIEIA 180
  181 IPFLMVMLIS DLALGILART APQMNVFLLS FGLKILLAIF TLWLLLPGIA YFTGIYLELM 240
  241 EKNLLAIIRG IGYGR

Type	Start	End	Confidence
Cytoplasmic	1	6	0.72
Transmembrane Helix	7	27	0.92
Non-Cytoplasmic	28	35	0.63
Transmembrane Helix	36	56	0.92
Cytoplasmic	57	63	0.70
Transmembrane Helix	64	89	0.83
Non-Cytoplasmic	90	109	0.75
Transmembrane Helix	110	133	0.73
Cytoplasmic	134	164	0.54
Transmembrane Helix	165	190	0.82
Non-Cytoplasmic	191	210	0.51
Transmembrane Helix	211	237	0.79
Cytoplasmic	238	255	0.60