YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044954, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHFVVGVLP YLTFLILVFG LIYRIRGWYA SKVKYQLNLF PVPDTPGGEI LKEILFFKTL  60
   61 YRFERPLWVM SYGFHLGIFL IVIGHIAGIA FAGHQFTLFG ATPEQSEKLS FAFGMLAGTL 120
  121 AFLGALALLL RRLSGQIKQV SDPWDYIDLL LILVIVTTGN AMRTLAPVEL STVKKYFADL 180
  181 FSLRPINYEL PDAFVLHYFF GQILLMYLPF SKLLHLAGGL INKAITLTGD GKAKLLRL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.86
Transmembrane Helix	7	25	0.94
Cytoplasmic	26	71	0.90
Transmembrane Helix	72	92	0.93
Non-Cytoplasmic	93	108	0.90
Transmembrane Helix	109	130	0.93
Cytoplasmic	131	145	0.84
Transmembrane Helix	146	166	0.80
Non-Cytoplasmic	167	193	0.86
Transmembrane Helix	194	216	0.71
Cytoplasmic	217	238	0.80