YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044947, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRIEGIEI LGTGYYVPEK VLTNKELESR LDTTDEWIVT RTGIRERRIA SPEETTLSMA  60
   61 YYASEKAIQK AKIEPGEIGL IIVATATPDM IFPATAAQLQ EKIGATNAGA FDLSIGCTGF 120
  121 IYALVTGALY TKVLYPQKVL VVGAEKLSAI VDWQDRSTAV LFGDGAGAVI LGVNPQKAGI 180
  181 LAFELGADGS GAELLKLPAG GSKLPASAET VEKRLHFIKM NGSEVFKFAV KKIEESVNGL 240
  241 LEKAKLQPDD IDLYLFHQAN RRIIVNSLER LALDIEKTFI NIELYGNTSA ASIPIALDEA 300
  301 IHAGKLKKGD KLLLSGFGAG LAWGGLIMEY

Type	Start	End	Confidence
Cytoplasmic	1	77	0.59
Transmembrane Helix	78	92	0.37
Non-Cytoplasmic	93	109	0.63
Transmembrane Helix	110	130	0.43
Cytoplasmic	131	311	0.54
Transmembrane Helix	312	327	0.45
Non-Cytoplasmic	328	330	0.79