YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044897, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLAYVVLS VAIYMVFVVA PEEKMMGIVQ KIFYFHVSAA WVAFLAFFVV FVGSIMFLIK  60
   61 RDYYWDGISL ASAEIGVVFT TIVITTGPIW AKTVWNAWWT WDPKLTTAII MWFIYLAYVV 120
  121 LRLAAGEEEK TARFAAIFGI IGFLDVPLVF AAGRWWQKTF HPIIFNNPSG GLDPAMKPAF 180
  181 FISLFAFTAL YIYLLVKSAR INLLHRELNR LKDIVNEKFY G

Type	Start	End	Confidence
Cytoplasmic	1	2	0.87
Transmembrane Helix	3	21	0.78
Non-Cytoplasmic	22	36	0.77
Transmembrane Helix	37	59	0.90
Cytoplasmic	60	67	0.83
Transmembrane Helix	68	91	0.85
Non-Cytoplasmic	92	104	0.88
Transmembrane Helix	105	125	0.91
Cytoplasmic	126	133	0.88
Transmembrane Helix	134	155	0.93
Non-Cytoplasmic	156	174	0.95
Transmembrane Helix	175	196	0.91
Cytoplasmic	197	221	0.97