YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044879, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTEQLAYQS PLRKIDPVYK LLFSFTLLFL GLTAPNPFFT LLPTLGVVSF FLVRKGKIPG  60
   61 QIYLKYLLLP GGFLLASLIG IMIDFRPAPY VNWQNLFLAL NAGGRALTSL LGLYFLIFTT 120
  121 PLLDLIAGLS RFGIPQFIIE IIIFIHRFIF IFFEIAGEII KAQEARLGYR NFRRGIYSFS 180
  181 LLTTGIFKGG LARAGQMTIS LESRGYNDKI VFLQPDYQNQ NYPLLFWGIV VVLALFTYGG 240
  241 AFIWRSF

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	42	0.91
Non-Cytoplasmic	43	61	0.82
Transmembrane Helix	62	85	0.86
Cytoplasmic	86	96	0.79
Transmembrane Helix	97	118	0.79
Non-Cytoplasmic	119	133	0.61
Transmembrane Helix	134	156	0.81
Cytoplasmic	157	174	0.83
Transmembrane Helix	175	192	0.90
Non-Cytoplasmic	193	223	0.89
Transmembrane Helix	224	244	0.95
Cytoplasmic	245	247	0.85