YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044823, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.94
Transmembrane Helix	11	30	0.95
Non-Cytoplasmic	31	37	0.70
Transmembrane Helix	38	58	0.90
Cytoplasmic	59	69	0.89
Transmembrane Helix	70	94	0.87
Non-Cytoplasmic	95	112	0.82
Transmembrane Helix	113	138	0.85
Cytoplasmic	139	150	0.63
Transmembrane Helix	151	166	0.61
Non-Cytoplasmic	167	193	0.61
Transmembrane Helix	194	215	0.85
Cytoplasmic	216	230	0.60
Transmembrane Helix	231	251	0.91
Non-Cytoplasmic	252	256	0.52
Transmembrane Helix	257	276	0.73
Cytoplasmic	277	302	0.82
Transmembrane Helix	303	329	0.80
Non-Cytoplasmic	330	345	0.75
Transmembrane Helix	346	370	0.88
Cytoplasmic	371	390	0.79
Transmembrane Helix	391	415	0.80
Non-Cytoplasmic	416	421	0.81
Transmembrane Helix	422	442	0.84
Cytoplasmic	443	458	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDTASIKPR LTFLPPFIAV VTLILAITVL NLSPVYPMVL AFFFTIIFAL IDGYDYRFIY  60
   61 RSALEGIKSV WTIIVMFTLL GALIALWLAG GTIATMIYYG LQLVEPKFFL VEVFLLSVLL 120
  121 SLVIGTSLGT ISTLGVVLMG IGRGLNLPPE MIAGAVVAGA FFGDRISPVS TSLYLTAEVT 180
  181 GTKVEDNLKL MLKTTYLPFV LTIFLYFVFG MLSPTKEAGI TSTYLKLLQS NFYLSPVLLL 240
  241 LPLLFLILAL VRVSIKINLF INVVLSFILG IVYQKVPIQK LLLEAFTGFE APKGLKALAG 300
  301 GGVLRYLSLV SIILVASAMA GILINTGVFT TLLIRPLAHI KSYFSLTFGI MILAVLLLMV 360
  361 TCTQALAIMI PGMTLRDEFK RKANANELSR ILADSAVVLA PLIPWNMAAI LSGAALQVNP 420
  421 KAYILYAFYL WLTPLTNLLV SLRKQGEVYG EKGLGNYR