YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77996892, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKFWEKDWI KRLLQNKAAV VGLIIVLLLL FAAIFAPVLA PYDPIKDGSL QNRLKPPSSE  60
   61 HLLGTDKLGR DILSRIIFGA RISVEIGVIS VGLALIVGTL MGLIAGYYGG LLDSFLMRIV 120
  121 DIILAFPSIL LAIAITSVLG PSLNNAMIAV GIVMVPSFAR VVRSTVLSLK EMEFVEAARA 180
  181 IGATDFTILF RHILPNSMAP IIVQGTMNIG TAILDAAGLS FLGLGAQPPT PEWGAMLVDA 240
  241 RELLVKAPWV AFFPGLAIML NVLGFNLLGD GLRDALDPRL KQ

Type	Start	End	Confidence
Cytoplasmic	1	18	0.92
Transmembrane Helix	19	40	0.92
Non-Cytoplasmic	41	85	0.96
Transmembrane Helix	86	108	0.91
Cytoplasmic	109	118	0.71
Transmembrane Helix	119	139	0.91
Non-Cytoplasmic	140	145	0.71
Transmembrane Helix	146	164	0.87
Cytoplasmic	165	200	0.78
Transmembrane Helix	201	226	0.76
Non-Cytoplasmic	227	246	0.74
Transmembrane Helix	247	269	0.87
Cytoplasmic	270	282	0.74