YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044772, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSIINLFLA FLKVGAFSFG GAYSLIPIIE REVVEHYRWL TKDEFMEVLG ITQAIPGAIS  60
   61 AKFATYTGYK VAGIIGVVVA NIGNILPPVL LMLSLIGILF KIGHHPLTKN FIKGVKYGTF 120
  121 AMVLGFGVSM LLKTSFAVKG YIIAALVFTA VAFFNFDPAL TIVGAGILGI ILFK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.52
Transmembrane Helix	7	29	0.86
Non-Cytoplasmic	30	73	0.54
Transmembrane Helix	74	100	0.79
Cytoplasmic	101	113	0.78
Transmembrane Helix	114	137	0.83
Non-Cytoplasmic	138	144	0.63
Transmembrane Helix	145	173	0.81
Cytoplasmic	174	174	0.93