YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044762, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESTGILEG LLHPSLYVKT SWGIILFLAI LSYLGTRKME RVPRGLQNVL EMVVEGLYNF  60
   61 IGGIVGEKKA PKYFPFIATF FLFILISNYI GLLPFAGHEG PYVPPTSTIS VTAALAIIVF 120
  121 FATQFFGIAE KGLGYFKHFI SPFIFMLPLN ILEQLVRPLS LSMRLYGNIY GHELVVGTFM 180
  181 GLVPMLIPVV FNLLGVLTGA IQAVVFTLLT SSYIGEAVHD EHH

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.91
Transmembrane Helix	16	36	0.91
Cytoplasmic	37	72	0.91
Transmembrane Helix	73	96	0.87
Non-Cytoplasmic	97	105	0.78
Transmembrane Helix	106	128	0.88
Cytoplasmic	129	134	0.81
Transmembrane Helix	135	156	0.77
Non-Cytoplasmic	157	174	0.69
Transmembrane Helix	175	209	0.71
Cytoplasmic	210	223	0.65