YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77996815, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDIGHLIFN FLLFPGGLFA LVLGLLLMGI DRKIVARAQR RVGPPLYQPF IDLAKLTLKE  60
   61 VVVPETAHLP AFRLAPLLGF AGMLVAVTLI PVAGVYPGLN FAGDLLVLLY LLSLPAIALI 120
  121 VGGSASSSPF GAIGSSREMV MMMAYELPLL IVLVTVALKV GLATGGIATF SLSKIVQYQV 180
  181 ENGALLFDYT MLPALLAFLV FIPGTIGVVP FDIPEAETEI VEGPILEYSG SWLALFKLTN 240
  241 ALKMVVVLGL GIALFFPTPL SENLLLNLVW FLLKCLILLF ISITIIRSST GRVRIDQAFK 300
  301 FYLKYPTVLA LISLILTLVK G

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.91
Transmembrane Helix	8	30	0.92
Cytoplasmic	31	73	0.97
Transmembrane Helix	74	96	0.88
Non-Cytoplasmic	97	105	0.80
Transmembrane Helix	106	130	0.84
Cytoplasmic	131	146	0.80
Transmembrane Helix	147	170	0.86
Non-Cytoplasmic	171	189	0.89
Transmembrane Helix	190	211	0.89
Cytoplasmic	212	238	0.86
Transmembrane Helix	239	258	0.90
Non-Cytoplasmic	259	267	0.74
Transmembrane Helix	268	286	0.95
Cytoplasmic	287	300	0.83
Transmembrane Helix	301	319	0.88
Non-Cytoplasmic	320	321	0.79